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Software

List of software developed at Igepp:

Mamoth

K. Reichel, V. Bahier, C. Midoux, J.-P. Masson, S. Stoeckel soumis : "Interpretation and approximation tools for big, dense Markov chain transitions matrices in population genetics". pdf

Download

Contact: K. Reichel

Pasex

Stoeckel S. & Masson J.P. (2014). The Exact Distributions of FIS under Partial Asexuality in Small Finite Populations with Mutation. PLoS ONE, 9(1): e85228. pdf

Download

Contact: S. Stoeckel

ClonEstiMate 1.01

Becheler Ronan, Masson Jean-Pierre, Arnaud-Haond Sophie, Halkett Fabien, Mariette Stéphanie, Guillemin Maire-Laure, Valéro Myriam, Destombe Christophe, Stoeckel Solenn (xxxx).ClonEstiMate, a Bayesian method for quantifying rates of clonality of populations genotyped at two-time steps. submitted to Molecular Ecology Resources in May 2016.

Download for GNU/Linux

Download for Windows

Contact: S. Stoeckel

XPloidAssignment 1.0

Montecinos AE, Guillemin M-L, Couceiro L, Peters AF, Stoeckel S & Valero M (2017). Hybridization between two cryptic filamentous brown seaweeds along the shore: Analysing pre- and post-zygotic barriers in populations of individuals with varying ploidy levels. Molecular Ecology, Accepted manuscript online: 12 March 2017. http://onlinelibrary.wiley.com/doi/10.1111/mec.14098/full

Download for GNU/Linux

Download for Windows

Contact: S. Stoeckel